Global Phylogeny of Shigella sonnei Strains from Limited Single Nucleotide Polymorphisms (SNPs) and Development of a Rapid and Cost-Effective SNP-Typing Scheme for Strain Identification by High-Resolution Melting Analysis
Identifieur interne : 004674 ( Main/Exploration ); précédent : 004673; suivant : 004675Global Phylogeny of Shigella sonnei Strains from Limited Single Nucleotide Polymorphisms (SNPs) and Development of a Rapid and Cost-Effective SNP-Typing Scheme for Strain Identification by High-Resolution Melting Analysis
Auteurs : Vartul Sangal [Royaume-Uni] ; Kathryn E. Holt [Australie] ; Jianfeng Yuan [Royaume-Uni] ; Derek J. Brown [Royaume-Uni] ; Ingrid Filliol-Toutain [France] ; François-Xavier Weill [France] ; Dong-Wook Kim [Corée du Sud] ; Wanderley Dias Da Silveira [Brésil] ; Derek Pickard [Royaume-Uni] ; Nicholas R. Thomson [Royaume-Uni] ; Julian Parkhill [Royaume-Uni] ; Jun Yu [Royaume-Uni]Source :
- Journal of Clinical Microbiology [ 0095-1137 ] ; 2013.
Abstract
The current
Url:
DOI: 10.1128/JCM.02238-12
PubMed: 23115259
PubMed Central: 3536230
Affiliations:
- Australie, Brésil, Corée du Sud, France, Royaume-Uni
- Victoria (État), Île-de-France
- Melbourne, Paris
- Université de Melbourne
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 001231
- to stream Pmc, to step Curation: 001092
- to stream Pmc, to step Checkpoint: 001A96
- to stream Ncbi, to step Merge: 001023
- to stream Ncbi, to step Curation: 001023
- to stream Ncbi, to step Checkpoint: 001023
- to stream Main, to step Merge: 004785
- to stream Main, to step Curation: 004674
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Global Phylogeny of <named-content content-type="genus-species">Shigella sonnei</named-content>
Strains from Limited Single Nucleotide Polymorphisms (SNPs) and Development of a Rapid and Cost-Effective SNP-Typing Scheme for Strain Identification by High-Resolution Melting Analysis</title>
<author><name sortKey="Sangal, Vartul" sort="Sangal, Vartul" uniqKey="Sangal V" first="Vartul" last="Sangal">Vartul Sangal</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow</wicri:regionArea>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Holt, Kathryn E" sort="Holt, Kathryn E" uniqKey="Holt K" first="Kathryn E." last="Holt">Kathryn E. Holt</name>
<affiliation wicri:level="4"><nlm:aff id="aff2">Department of Microbiology and Immunology, University of Melbourne, Melbourne, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Department of Microbiology and Immunology, University of Melbourne, Melbourne</wicri:regionArea>
<placeName><settlement type="city">Melbourne</settlement>
<region type="état">Victoria (État)</region>
<settlement type="city">Melbourne</settlement>
</placeName>
<orgName type="university">Université de Melbourne</orgName>
</affiliation>
</author>
<author><name sortKey="Yuan, Jianfeng" sort="Yuan, Jianfeng" uniqKey="Yuan J" first="Jianfeng" last="Yuan">Jianfeng Yuan</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow</wicri:regionArea>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Brown, Derek J" sort="Brown, Derek J" uniqKey="Brown D" first="Derek J." last="Brown">Derek J. Brown</name>
<affiliation wicri:level="1"><nlm:aff id="aff3">Scottish Salmonella, Shigella & Clostridium difficile Reference Laboratory, Stobhill Hospital, Glasgow, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Scottish Salmonella, Shigella & Clostridium difficile Reference Laboratory, Stobhill Hospital, Glasgow</wicri:regionArea>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Filliol Toutain, Ingrid" sort="Filliol Toutain, Ingrid" uniqKey="Filliol Toutain I" first="Ingrid" last="Filliol-Toutain">Ingrid Filliol-Toutain</name>
<affiliation wicri:level="3"><nlm:aff id="aff4">French National Reference Centre for Escherichia coli and Shigella, Institut Pasteur, Paris, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>French National Reference Centre for Escherichia coli and Shigella, Institut Pasteur, Paris</wicri:regionArea>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Weill, Francois Xavier" sort="Weill, Francois Xavier" uniqKey="Weill F" first="François-Xavier" last="Weill">François-Xavier Weill</name>
<affiliation wicri:level="3"><nlm:aff id="aff4">French National Reference Centre for Escherichia coli and Shigella, Institut Pasteur, Paris, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>French National Reference Centre for Escherichia coli and Shigella, Institut Pasteur, Paris</wicri:regionArea>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kim, Dong Wook" sort="Kim, Dong Wook" uniqKey="Kim D" first="Dong-Wook" last="Kim">Dong-Wook Kim</name>
<affiliation wicri:level="1"><nlm:aff id="aff5">Hanyang University, Ansan, South Korea</nlm:aff>
<country xml:lang="fr">Corée du Sud</country>
<wicri:regionArea>Hanyang University, Ansan</wicri:regionArea>
<wicri:noRegion>Ansan</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Da Silveira, Wanderley Dias" sort="Da Silveira, Wanderley Dias" uniqKey="Da Silveira W" first="Wanderley Dias" last="Da Silveira">Wanderley Dias Da Silveira</name>
<affiliation wicri:level="1"><nlm:aff id="aff6">Biology Institute, University of Campinas, Campinas, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Biology Institute, University of Campinas, Campinas</wicri:regionArea>
<wicri:noRegion>Campinas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pickard, Derek" sort="Pickard, Derek" uniqKey="Pickard D" first="Derek" last="Pickard">Derek Pickard</name>
<affiliation wicri:level="1"><nlm:aff id="aff7">Wellcome Trust Sanger Institute, Cambridge, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Wellcome Trust Sanger Institute, Cambridge</wicri:regionArea>
<wicri:noRegion>Cambridge</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Thomson, Nicholas R" sort="Thomson, Nicholas R" uniqKey="Thomson N" first="Nicholas R." last="Thomson">Nicholas R. Thomson</name>
<affiliation wicri:level="1"><nlm:aff id="aff7">Wellcome Trust Sanger Institute, Cambridge, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Wellcome Trust Sanger Institute, Cambridge</wicri:regionArea>
<wicri:noRegion>Cambridge</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Parkhill, Julian" sort="Parkhill, Julian" uniqKey="Parkhill J" first="Julian" last="Parkhill">Julian Parkhill</name>
<affiliation wicri:level="1"><nlm:aff id="aff7">Wellcome Trust Sanger Institute, Cambridge, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Wellcome Trust Sanger Institute, Cambridge</wicri:regionArea>
<wicri:noRegion>Cambridge</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yu, Jun" sort="Yu, Jun" uniqKey="Yu J" first="Jun" last="Yu">Jun Yu</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow</wicri:regionArea>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">23115259</idno>
<idno type="pmc">3536230</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3536230</idno>
<idno type="RBID">PMC:3536230</idno>
<idno type="doi">10.1128/JCM.02238-12</idno>
<date when="2013">2013</date>
<idno type="wicri:Area/Pmc/Corpus">001231</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001231</idno>
<idno type="wicri:Area/Pmc/Curation">001092</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001092</idno>
<idno type="wicri:Area/Pmc/Checkpoint">001A96</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">001A96</idno>
<idno type="wicri:Area/Ncbi/Merge">001023</idno>
<idno type="wicri:Area/Ncbi/Curation">001023</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">001023</idno>
<idno type="wicri:doubleKey">0095-1137:2013:Sangal V:global:phylogeny:of</idno>
<idno type="wicri:Area/Main/Merge">004785</idno>
<idno type="wicri:Area/Main/Curation">004674</idno>
<idno type="wicri:Area/Main/Exploration">004674</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Global Phylogeny of <named-content content-type="genus-species">Shigella sonnei</named-content>
Strains from Limited Single Nucleotide Polymorphisms (SNPs) and Development of a Rapid and Cost-Effective SNP-Typing Scheme for Strain Identification by High-Resolution Melting Analysis</title>
<author><name sortKey="Sangal, Vartul" sort="Sangal, Vartul" uniqKey="Sangal V" first="Vartul" last="Sangal">Vartul Sangal</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow</wicri:regionArea>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Holt, Kathryn E" sort="Holt, Kathryn E" uniqKey="Holt K" first="Kathryn E." last="Holt">Kathryn E. Holt</name>
<affiliation wicri:level="4"><nlm:aff id="aff2">Department of Microbiology and Immunology, University of Melbourne, Melbourne, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Department of Microbiology and Immunology, University of Melbourne, Melbourne</wicri:regionArea>
<placeName><settlement type="city">Melbourne</settlement>
<region type="état">Victoria (État)</region>
<settlement type="city">Melbourne</settlement>
</placeName>
<orgName type="university">Université de Melbourne</orgName>
</affiliation>
</author>
<author><name sortKey="Yuan, Jianfeng" sort="Yuan, Jianfeng" uniqKey="Yuan J" first="Jianfeng" last="Yuan">Jianfeng Yuan</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow</wicri:regionArea>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Brown, Derek J" sort="Brown, Derek J" uniqKey="Brown D" first="Derek J." last="Brown">Derek J. Brown</name>
<affiliation wicri:level="1"><nlm:aff id="aff3">Scottish Salmonella, Shigella & Clostridium difficile Reference Laboratory, Stobhill Hospital, Glasgow, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Scottish Salmonella, Shigella & Clostridium difficile Reference Laboratory, Stobhill Hospital, Glasgow</wicri:regionArea>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Filliol Toutain, Ingrid" sort="Filliol Toutain, Ingrid" uniqKey="Filliol Toutain I" first="Ingrid" last="Filliol-Toutain">Ingrid Filliol-Toutain</name>
<affiliation wicri:level="3"><nlm:aff id="aff4">French National Reference Centre for Escherichia coli and Shigella, Institut Pasteur, Paris, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>French National Reference Centre for Escherichia coli and Shigella, Institut Pasteur, Paris</wicri:regionArea>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Weill, Francois Xavier" sort="Weill, Francois Xavier" uniqKey="Weill F" first="François-Xavier" last="Weill">François-Xavier Weill</name>
<affiliation wicri:level="3"><nlm:aff id="aff4">French National Reference Centre for Escherichia coli and Shigella, Institut Pasteur, Paris, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>French National Reference Centre for Escherichia coli and Shigella, Institut Pasteur, Paris</wicri:regionArea>
<placeName><region type="region">Île-de-France</region>
<region type="old region">Île-de-France</region>
<settlement type="city">Paris</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kim, Dong Wook" sort="Kim, Dong Wook" uniqKey="Kim D" first="Dong-Wook" last="Kim">Dong-Wook Kim</name>
<affiliation wicri:level="1"><nlm:aff id="aff5">Hanyang University, Ansan, South Korea</nlm:aff>
<country xml:lang="fr">Corée du Sud</country>
<wicri:regionArea>Hanyang University, Ansan</wicri:regionArea>
<wicri:noRegion>Ansan</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Da Silveira, Wanderley Dias" sort="Da Silveira, Wanderley Dias" uniqKey="Da Silveira W" first="Wanderley Dias" last="Da Silveira">Wanderley Dias Da Silveira</name>
<affiliation wicri:level="1"><nlm:aff id="aff6">Biology Institute, University of Campinas, Campinas, Brazil</nlm:aff>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Biology Institute, University of Campinas, Campinas</wicri:regionArea>
<wicri:noRegion>Campinas</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pickard, Derek" sort="Pickard, Derek" uniqKey="Pickard D" first="Derek" last="Pickard">Derek Pickard</name>
<affiliation wicri:level="1"><nlm:aff id="aff7">Wellcome Trust Sanger Institute, Cambridge, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Wellcome Trust Sanger Institute, Cambridge</wicri:regionArea>
<wicri:noRegion>Cambridge</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Thomson, Nicholas R" sort="Thomson, Nicholas R" uniqKey="Thomson N" first="Nicholas R." last="Thomson">Nicholas R. Thomson</name>
<affiliation wicri:level="1"><nlm:aff id="aff7">Wellcome Trust Sanger Institute, Cambridge, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Wellcome Trust Sanger Institute, Cambridge</wicri:regionArea>
<wicri:noRegion>Cambridge</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Parkhill, Julian" sort="Parkhill, Julian" uniqKey="Parkhill J" first="Julian" last="Parkhill">Julian Parkhill</name>
<affiliation wicri:level="1"><nlm:aff id="aff7">Wellcome Trust Sanger Institute, Cambridge, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Wellcome Trust Sanger Institute, Cambridge</wicri:regionArea>
<wicri:noRegion>Cambridge</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yu, Jun" sort="Yu, Jun" uniqKey="Yu J" first="Jun" last="Yu">Jun Yu</name>
<affiliation wicri:level="1"><nlm:aff id="aff1">Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, United Kingdom</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Strathclyde Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow</wicri:regionArea>
<wicri:noRegion>Glasgow</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Journal of Clinical Microbiology</title>
<idno type="ISSN">0095-1137</idno>
<idno type="eISSN">1098-660X</idno>
<imprint><date when="2013">2013</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>The current <named-content content-type="genus-species">Shigella sonnei</named-content>
pandemic involves geographically associated, multidrug-resistant clones. This study has demonstrated that <named-content content-type="genus-species">S. sonnei</named-content>
phylogeny can be accurately defined with limited single nucleotide polymorphisms (SNPs). By typing 6 informative SNPs using a high-resolution melting (HRM) assay, major <named-content content-type="genus-species">S. sonnei</named-content>
lineages/sublineages can be identified as defined by whole-genome variation.</p>
</div>
</front>
</TEI>
<affiliations><list><country><li>Australie</li>
<li>Brésil</li>
<li>Corée du Sud</li>
<li>France</li>
<li>Royaume-Uni</li>
</country>
<region><li>Victoria (État)</li>
<li>Île-de-France</li>
</region>
<settlement><li>Melbourne</li>
<li>Paris</li>
</settlement>
<orgName><li>Université de Melbourne</li>
</orgName>
</list>
<tree><country name="Royaume-Uni"><noRegion><name sortKey="Sangal, Vartul" sort="Sangal, Vartul" uniqKey="Sangal V" first="Vartul" last="Sangal">Vartul Sangal</name>
</noRegion>
<name sortKey="Brown, Derek J" sort="Brown, Derek J" uniqKey="Brown D" first="Derek J." last="Brown">Derek J. Brown</name>
<name sortKey="Parkhill, Julian" sort="Parkhill, Julian" uniqKey="Parkhill J" first="Julian" last="Parkhill">Julian Parkhill</name>
<name sortKey="Pickard, Derek" sort="Pickard, Derek" uniqKey="Pickard D" first="Derek" last="Pickard">Derek Pickard</name>
<name sortKey="Thomson, Nicholas R" sort="Thomson, Nicholas R" uniqKey="Thomson N" first="Nicholas R." last="Thomson">Nicholas R. Thomson</name>
<name sortKey="Yu, Jun" sort="Yu, Jun" uniqKey="Yu J" first="Jun" last="Yu">Jun Yu</name>
<name sortKey="Yuan, Jianfeng" sort="Yuan, Jianfeng" uniqKey="Yuan J" first="Jianfeng" last="Yuan">Jianfeng Yuan</name>
</country>
<country name="Australie"><region name="Victoria (État)"><name sortKey="Holt, Kathryn E" sort="Holt, Kathryn E" uniqKey="Holt K" first="Kathryn E." last="Holt">Kathryn E. Holt</name>
</region>
</country>
<country name="France"><region name="Île-de-France"><name sortKey="Filliol Toutain, Ingrid" sort="Filliol Toutain, Ingrid" uniqKey="Filliol Toutain I" first="Ingrid" last="Filliol-Toutain">Ingrid Filliol-Toutain</name>
</region>
<name sortKey="Weill, Francois Xavier" sort="Weill, Francois Xavier" uniqKey="Weill F" first="François-Xavier" last="Weill">François-Xavier Weill</name>
</country>
<country name="Corée du Sud"><noRegion><name sortKey="Kim, Dong Wook" sort="Kim, Dong Wook" uniqKey="Kim D" first="Dong-Wook" last="Kim">Dong-Wook Kim</name>
</noRegion>
</country>
<country name="Brésil"><noRegion><name sortKey="Da Silveira, Wanderley Dias" sort="Da Silveira, Wanderley Dias" uniqKey="Da Silveira W" first="Wanderley Dias" last="Da Silveira">Wanderley Dias Da Silveira</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Asie/explor/AustralieFrV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 004674 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 004674 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Asie |area= AustralieFrV1 |flux= Main |étape= Exploration |type= RBID |clé= PMC:3536230 |texte= Global Phylogeny of Shigella sonnei Strains from Limited Single Nucleotide Polymorphisms (SNPs) and Development of a Rapid and Cost-Effective SNP-Typing Scheme for Strain Identification by High-Resolution Melting Analysis }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:23115259" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a AustralieFrV1
This area was generated with Dilib version V0.6.33. |